Read XML for Bioinformatics by Ethan Cerami Online
Read [Ethan Cerami Book] ^ XML for Bioinformatics Online # PDF eBook or Kindle ePUB free. XML for Bioinformatics Nice Brief Overview This is a nice brief introductory overview of xml in general and its implementations in biological research. The thing I liked about it was it was not too intensive on any topic, and it provided a lot of useful resources both online and literature-wise for me to look up for more informati]
| Title | : | XML for Bioinformatics |
| Author | : | |
| Rating | : | 4.62 (709 Votes) |
| Asin | : | 0387230289 |
| Format Type | : | paperback |
| Number of Pages | : | 304 Pages |
| Publish Date | : | 2013-10-11 |
| Language | : | English |
We explore the origins of XML, de?ne basic rules for XML document structure, and introduce XML Na- spaces. This chapter provides an introduction to XML and describes the use of XML in biological data exchange. It does so by introducing the fundamentals of XML, Document Type De?nitions (DTDs), XML Namespaces, XML Schema, and XML parsing, and illustrating these concepts with speci?c bioinformatics case studies. This chapter introduces the fundamental concepts of XML and the Bioinformatic Sequence Markup Language (BSML). A bird’s-eye view of our ?rst case study, the Distributed Annotation System (DAS), is provided and we examine a sample DAS XML document. The book is divided into nine chapters: Chapter 1: Introduction to XML for Bioinformatics. Introduction The goal of this book is to introduce XML to a bioinformatics audience. Chapter 2: Fundamentals of XML and BSML. We also explore several sample BSML documents and visualize these documents in the TM Rescentris Genomic Workspace Viewer.. The chapter concludes with a discussion of the pros and cons of using XML in bioinformatic applications. The book does not assume any previous knowledge of XML and is geared toward those who want a solid introduction to fundamental XML concepts
Core XML concepts include: fundamentals of XML, Document Type Definitions (DTDs), XML Namespaces, XML Schema, XML parsing in Perl and Java, web services and SOAP. A companion web site, available at: xmlbio/, provides complete access to all examples in the book.. XML is currently used to represent a diverse set of biological data, from nucleotide and protein sequences to protein-protein interactions and signal transduction pathways. From the Back CoverXML, or Extensible Markup Language, is rapidly becoming a critical tool in bioinformatics and biological data exchange. XML is also used in a wide array of bioinformatics applications, including stand-alone applications, federated database systems, distributed applications, and web services. It assumes no prior knowledge of XML, and illustrates all core concep
Nice Brief Overview This is a nice brief introductory overview of xml in general and its implementations in biological research. The thing I liked about it was it was not too intensive on any topic, and it provided a lot of useful resources both online and literature-wise for me to look up for more informati
Since 1997 he has also been a member of the Adjunct Faculty in Computer Science at New York University. . Ethan Cerami is Senior Software Engineer at the Computational Biology Center, Memorial Sloan-Kettering Cancer Center, New York, NY
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